3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12685

Details:

PFam ID : PF12685

PFam Domain Description : SpoIIIAH-like protein

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 183

Average sequence length: 182.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12685	C6PQR8_9CLOT_1_66	74.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12685	B0TEI1_HELMI_20_265	100

Sequence based PCA Plot of the family - PF12685 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=166 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay