3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04790

Details:

PFam ID : PF04790

PFam Domain Description : Sarcoglycan complex subunit protein

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 85

Average sequence length: 217.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04790	A9UT99_MONBE_63_321	64.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04790	B3M2Q5_DROAN_66_335	100

Sequence based PCA Plot of the family - PF04790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=238 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay