3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07980

Details:

PFam ID : PF07980

PFam Domain Description : SusD family

Number of Sequence in 50% Dataset : 1220

Number of Sequence in Full Dataset : 3039

Average sequence length: 277.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07980	E6MTB8_9BACT_279_420	98.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07980	C1AEC2_GEMAT_283_465	100

Sequence based PCA Plot of the family - PF07980 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=580 Length=8
Motif2 Start=428 Length=17
Motif3 Start=497 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay