3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13541

Details:

PFam ID : PF13541

PFam Domain Description : Subunit ChlI of Mg-chelatase

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 1803

Average sequence length: 112.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13541	A2SQA4_METLZ_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13541	B5Y8F9_COPPD_14_130	100

Sequence based PCA Plot of the family - PF13541 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=107 Length=11
Motif2 Start=1 Length=31

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay