3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07004

Details:

PFam ID : PF07004

PFam Domain Description : Sperm-tail PG-rich repeat

Number of Sequence in 50% Dataset : 996

Number of Sequence in Full Dataset : 2768

Average sequence length: 30.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07004	D2W2A2_NAEGR_473_629	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07004	A2GQ47_TRIVA_146_205	27

Sequence based PCA Plot of the family - PF07004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay