3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02616

Details:

PFam ID : PF02616

PFam Domain Description : ScpA/B protein

Number of Sequence in 50% Dataset : 229

Number of Sequence in Full Dataset : 1037

Average sequence length: 204.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02616	A9U7U6_PHYPA_1_293	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02616	D6PC73_9ARCH_66_313	100

Sequence based PCA Plot of the family - PF02616 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=229 Length=8
Motif3 Start=7 Length=8
Motif4 Start=218 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay