3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09439

Details:

PFam ID : PF09439

PFam Domain Description : Signal recognition particle receptor beta subunit

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 171

Average sequence length: 181.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09439	D7LCS0_ARALL_1_84	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09439	Q6BQN4_DEBHA_37_244	100

Sequence based PCA Plot of the family - PF09439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=10 Length=8
Motif3 Start=64 Length=8
Motif4 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay