3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08313

Details:

PFam ID : PF08313

PFam Domain Description : SCA7, zinc-binding domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 90

Average sequence length: 69.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08313	D8PPD6_SCHCM_1_53	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08313	D8PPD6_SCHCM_1_53	100

Sequence based PCA Plot of the family - PF08313 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=27
Motif2 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay