3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13755

Details:

PFam ID : PF13755

PFam Domain Description : Sensor N-terminal transmembrane domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 102

Average sequence length: 75.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13755	D8JRB2_HYPDA_48_122	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13755	E0TE51_PARBH_19_97	100

Sequence based PCA Plot of the family - PF13755 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay