3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10531

Details:

PFam ID : PF10531

PFam Domain Description : SLBB domain

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 3475

Average sequence length: 52.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10531	TXC9_CUPSA_6_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10531	A5FP79_DEHSB_44_86	87

Sequence based PCA Plot of the family - PF10531 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=44 Length=8
Motif2 Start=1 Length=20
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay