3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06800

Details:

PFam ID : PF06800

PFam Domain Description : Sugar transport protein

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 154

Average sequence length: 235.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06800	T144A_DICDI_218_364	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06800	C2CXN6_LACBR_1_287	100

Sequence based PCA Plot of the family - PF06800 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay