3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00017

Details:

PFam ID : PF00017

PFam Domain Description : SH2 domain

Number of Sequence in 50% Dataset : 441

Number of Sequence in Full Dataset : 1791

Average sequence length: 77.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00017	D3YZ26_MOUSE_48_80	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00017	Q9N147_MACMU_48_134	100

Sequence based PCA Plot of the family - PF00017 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=17
Motif2 Start=3 Length=8
Motif3 Start=67 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay