3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04092

Details:

PFam ID : PF04092

PFam Domain Description : SRS domain

Number of Sequence in 50% Dataset : 158

Number of Sequence in Full Dataset : 590

Average sequence length: 131.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04092	F0JB51_NEOCA_36_229	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04092	F0VKC1_NEOCA_52_162	98.6

Sequence based PCA Plot of the family - PF04092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=8
Motif2 Start=26 Length=18
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay