3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10612

Details:

PFam ID : PF10612

PFam Domain Description : Spore coat protein Z

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 39

Average sequence length: 143.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10612	A7GMA1_BACCN_1_188	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10612	A7GMA1_BACCN_1_188	100

Sequence based PCA Plot of the family - PF10612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=176 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay