3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10298

Details:

PFam ID : PF10298

PFam Domain Description : Sporulation Regulator WhiA N terminal

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 366

Average sequence length: 85.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10298	E6SM28_THEM7_45_97	35.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10298	E0QJC9_9FIRM_19_109	100

Sequence based PCA Plot of the family - PF10298 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=6 Length=17
Motif2 Start=32 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay