3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00344

Details:

PFam ID : PF00344

PFam Domain Description : SecY translocase

Number of Sequence in 50% Dataset : 149

Number of Sequence in Full Dataset : 1331

Average sequence length: 329.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00344	B3V6D8_9EURY_199_618	78.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00344	B3V6D8_9EURY_199_618	100

Sequence based PCA Plot of the family - PF00344 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=80 Length=8
Motif2 Start=13 Length=8
Motif3 Start=137 Length=8
Motif4 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay