3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04503

Details:

PFam ID : PF04503

PFam Domain Description : Single-stranded DNA binding protein, SSDP

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 43

Average sequence length: 211.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04503	Q4RMP1_TETNG_1_249	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04503	Q4T622_TETNG_46_502	90.4

Sequence based PCA Plot of the family - PF04503 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay