3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00862

Details:

PFam ID : PF00862

PFam Domain Description : Sucrose synthase

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 163

Average sequence length: 382.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00862	A5AMS9_VITVI_1_59	10.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00862	Q05FZ0_SOLLC_7_50	100

Sequence based PCA Plot of the family - PF00862 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay