3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12090

Details:

PFam ID : PF12090

PFam Domain Description : Spt20 family

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 120

Average sequence length: 215.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12090	F2U6A2_9EUKA_20_197	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12090	F2SAW7_TRITO_16_174	100

Sequence based PCA Plot of the family - PF12090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=80 Length=8
Motif2 Start=17 Length=8
Motif3 Start=129 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay