3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05416

Details:

PFam ID : PF05416

PFam Domain Description : Southampton virus-type processing peptidase

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 51

Average sequence length: 457.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05416	Q5IT19_9CALI_928_1123	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05416	Q9YLE5_9CALI_636_1166	100

Sequence based PCA Plot of the family - PF05416 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=498 Length=8
Motif3 Start=21 Length=8
Motif4 Start=374 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay