3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00299

Details:

PFam ID : PF00299

PFam Domain Description : Squash family serine protease inhibitor

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 25

Average sequence length: 27.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00299	Q70AI2_WHEAT_1_98	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00299	ITR5_SECED_1_27	100

Sequence based PCA Plot of the family - PF00299 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay