3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10328

Details:

PFam ID : PF10328

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Srx

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 367

Average sequence length: 232.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10328	E3LIV0_CAERE_1_101	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10328	A8WK94_CAEBR_12_167	100

Sequence based PCA Plot of the family - PF10328 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay