3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03491

Details:

PFam ID : PF03491

PFam Domain Description : Serotonin (5-HT) neurotransmitter transporter, N-terminus

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 11

Average sequence length: 37.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03491	Q8MYW3_DROME_192_229	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03491	SC6A4_RAT_23_64	100

Sequence based PCA Plot of the family - PF03491 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay