Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04267
Details:

PFam ID : PF04267

PFam Domain Description : Sarcosine oxidase, delta subunit family

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 233

Average sequence length: 82.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04267F1ZAF4_9SPHN_3_8166.6
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04267Q1H464_METFK_3_82100
Sequence based PCA Plot of the family - PF04267 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=39
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay