3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03777

Details:

PFam ID : PF03777

PFam Domain Description : Small secreted domain (DUF320)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 199

Average sequence length: 59.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03777	E1NSN7_9LACO_122_199	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03777	Q47TN0_THEFY_126_177	96.9

Sequence based PCA Plot of the family - PF03777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay