3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10676

Details:

PFam ID : PF10676

PFam Domain Description : Spore germination protein gerPA/gerPF

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 100

Average sequence length: 69.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10676	C2W0B4_BACCE_3_57	27.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10676	D3E9S1_GEOS4_1_73	100

Sequence based PCA Plot of the family - PF10676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay