3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08779

Details:

PFam ID : PF08779

PFam Domain Description : SARS coronavirus X4 like

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 4

Average sequence length: 61.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08779	B8BSR2_THAPS_311_431	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08779	Q5DIB9_CVHSA_16_95	100

Sequence based PCA Plot of the family - PF08779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay