3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05543

Details:

PFam ID : PF05543

PFam Domain Description : Staphopain peptidase C47

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 18

Average sequence length: 162.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05543	E6G7B3_ENTFA_22_141	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05543	D2BPF2_LACLK_629_812	100

Sequence based PCA Plot of the family - PF05543 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay