3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07039

Details:

PFam ID : PF07039

PFam Domain Description : SGF29 tudor-like domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 121

Average sequence length: 129.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07039	E1F5C9_GIAIA_2_135	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07039	E6RG19_CRYGW_155_319	100

Sequence based PCA Plot of the family - PF07039 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=83 Length=8
Motif3 Start=1 Length=8
Motif4 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay