3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03531

Details:

PFam ID : PF03531

PFam Domain Description : Structure-specific recognition protein (SSRP1)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 150

Average sequence length: 193.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03531	B0XC20_CULQU_15_94	76.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03531	E6REF3_CRYGW_75_318	100

Sequence based PCA Plot of the family - PF03531 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=186 Length=11
Motif3 Start=70 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay