3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04996

Details:

PFam ID : PF04996

PFam Domain Description : Succinylarginine dihydrolase

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 130

Average sequence length: 414.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04996	E3Y2Y2_SHIFL_1_159	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04996	D6YVN4_WADCW_1_451	100

Sequence based PCA Plot of the family - PF04996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=161 Length=11
Motif2 Start=7 Length=14
Motif3 Start=124 Length=11
Motif4 Start=55 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay