3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05924

Details:

PFam ID : PF05924

PFam Domain Description : SAMP Motif

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 27

Average sequence length: 19.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05924	D7EI69_TRICA_325_349	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05924	F2X0U7_PIG_1310_1330	100

Sequence based PCA Plot of the family - PF05924 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay