3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12390

Details:

PFam ID : PF12390

PFam Domain Description : Selenocysteine synthase N terminal

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 238

Average sequence length: 39.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12390	D9PQN0_PEPMA_9_48	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12390	A0YH50_9GAMM_23_62	99.1

Sequence based PCA Plot of the family - PF12390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay