3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03343

Details:

PFam ID : PF03343

PFam Domain Description : SART-1 family

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 199

Average sequence length: 428.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03343	Q23S00_TETTH_2_564	63.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03343	Q00U57_OSTTA_164_389	99.4

Sequence based PCA Plot of the family - PF03343 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=720 Length=23
Motif2 Start=12 Length=8
Motif3 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay