3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03489

Details:

PFam ID : PF03489

PFam Domain Description : Saposin-like type B, region 2

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 493

Average sequence length: 34.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03489	A8I478_CHLRE_171_204	17.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03489	B7Q6Z1_IXOSC_183_217	99.3

Sequence based PCA Plot of the family - PF03489 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay