3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00720

Details:

PFam ID : PF00720

PFam Domain Description : Subtilisin inhibitor-like

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 107

Average sequence length: 89.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00720	A4F9J5_SACEN_17_124	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00720	A4F9J5_SACEN_17_124	98.1

Sequence based PCA Plot of the family - PF00720 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=20
Motif2 Start=79 Length=8
Motif3 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay