3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04542

Details:

PFam ID : PF04542

PFam Domain Description : Sigma-70 region 2

Number of Sequence in 50% Dataset : 1395

Number of Sequence in Full Dataset : 11500

Average sequence length: 69.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04542	A6C637_9PLAN_1_43	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04542	A3IGG4_9BACI_36_79	99.4

Sequence based PCA Plot of the family - PF04542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=62 Length=20
Motif3 Start=27 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay