3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04977

Details:

PFam ID : PF04977

PFam Domain Description : Septum formation initiator

Number of Sequence in 50% Dataset : 397

Number of Sequence in Full Dataset : 1245

Average sequence length: 78.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04977	D0KPK4_SULS9_207_381	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04977	A6GB68_9DELT_8_102	100

Sequence based PCA Plot of the family - PF04977 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay