3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14435

Details:

PFam ID : PF14435

PFam Domain Description : SUKH-4 immunity protein

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 102

Average sequence length: 158.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14435	C7Q3M3_CATAD_5_147	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14435	A6CE10_9PLAN_3_182	93.0

Sequence based PCA Plot of the family - PF14435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay