3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05217

Details:

PFam ID : PF05217

PFam Domain Description : STOP protein

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 182

Average sequence length: 161.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05217	Q22CE2_TETTH_29_188	98.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05217	C4Q8E9_SCHMA_5_185	99.4

Sequence based PCA Plot of the family - PF05217 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=81 Length=8
Motif2 Start=178 Length=8
Motif3 Start=45 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay