3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01390

Details:

PFam ID : PF01390

PFam Domain Description : SEA domain

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 459

Average sequence length: 103.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01390	B4QBB0_DROSI_470_549	39.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01390	C3Y515_BRAFL_186_244	99.7

Sequence based PCA Plot of the family - PF01390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=10 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay