3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13275

Details:

PFam ID : PF13275

PFam Domain Description : S4 domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 573

Average sequence length: 64.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13275	Q2NG24_METST_30_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13275	C5J5G0_MYCCR_3_67	100

Sequence based PCA Plot of the family - PF13275 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=33 Length=28
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay