3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05036

Details:

PFam ID : PF05036

PFam Domain Description : Sporulation related domain

Number of Sequence in 50% Dataset : 801

Number of Sequence in Full Dataset : 2262

Average sequence length: 74.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05036	F0G7N4_9BURK_22_81	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05036	C1A7M7_GEMAT_310_384	99.8

Sequence based PCA Plot of the family - PF05036 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=5 Length=17
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay