3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02810

Details:

PFam ID : PF02810

PFam Domain Description : SEC-C motif

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 1138

Average sequence length: 20.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02810	E7MMZ2_9FIRM_374_493	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02810	E2WV75_ECOLX_114_127	93.8

Sequence based PCA Plot of the family - PF02810 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay