3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03533

Details:

PFam ID : PF03533

PFam Domain Description : SPO11 homologue

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 7

Average sequence length: 36.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03533	B0XC20_CULQU_15_94	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03533	SPO11_HUMAN_2_44	100

Sequence based PCA Plot of the family - PF03533 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay