3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05504

Details:

PFam ID : PF05504

PFam Domain Description : Spore germination B3/ GerAC like, C-terminal

Number of Sequence in 50% Dataset : 335

Number of Sequence in Full Dataset : 537

Average sequence length: 164.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05504	C5E219_LACTC_186_345	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05504	Q2RGV3_MOOTA_238_454	100

Sequence based PCA Plot of the family - PF05504 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=18
Motif3 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay