3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08999 Details: PFam ID : PF08999 PFam Domain Description : Surfactant protein C, N terminal propeptide Number of Sequence in 50% Dataset : 5 Number of Sequence in Full Dataset : 18 Average sequence length: 39.2 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08999D3BHI0_POLPA_9_62No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08999F1RMB3_PIG_1_93100 Sequence based PCA Plot of the family - PF08999 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=20 Length=8Motif2 Start=11 Length=8Motif3 Start=2 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF08999
PFam Domain Description : Surfactant protein C, N terminal propeptide
Number of Sequence in 50% Dataset : 5
Number of Sequence in Full Dataset : 18
Average sequence length: 39.2
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER