3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05835

Details:

PFam ID : PF05835

PFam Domain Description : Synaphin protein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 62

Average sequence length: 114.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05835	Q91915_XENLA_5_119	27.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05835	Q21168_CAEEL_1_79	96.7

Sequence based PCA Plot of the family - PF05835 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay