3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08518

Details:

PFam ID : PF08518

PFam Domain Description : Spa2 homology domain (SHD) of GIT

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 110

Average sequence length: 30.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08518	Q8SWF9_ENCCU_59_88	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08518	Q8SWF9_ENCCU_59_88	100

Sequence based PCA Plot of the family - PF08518 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay