3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08920

Details:

PFam ID : PF08920

PFam Domain Description : Splicing factor 3B subunit 1

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 124

Average sequence length: 151.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08920	B5RUX1_DEBHA_86_225	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08920	F0YBA2_9STRA_153_447	100

Sequence based PCA Plot of the family - PF08920 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=14
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay